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Cytometry Development Workshop
Lab Research Topics
Murphy Lab - Software - PLoS CB 2015 - Punctate Proteins
The software and intermediate results used for the following paper can be downloaded below:
G. R. Johnson, J. Li, A. Shariff, G.K.Rohde, and R.F. Murphy (2015) Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of their Relation to Microtubules. PLoS Computational Biology 11:e1004614.
Recreating resultsTo recreate the results from the article (i.e. the figures and tables),
Download and expand the source code to the desired directory.
tar -xzf PLoS_CB_PP_source_code.tgz
Download and expand the intermediate results into the same root directory
tar -xzf PLoS_CB_PP_intermediate_results.tgz
Go into the code directory and run the code
Note that the masterscript will check for the presence of the intermediate results files and if they are not present it will process the primary images. Doing all calculations from the primary data will take approximately one week, depending on number of cores available.
Last Updated: 07 Dec 2015
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