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Murphy Lab - Information


The People of Murphy Lab

Bob Dr. Robert F. Murphy
Short CV (as html)
Long CV (as PDF)
Biography (as html)
Publications

Ph.D. Students

  • Haoran Chen, Computational Biology Ph.D. Program
  • Gary Wilkins, Biological Sciences Ph.D. Program
  • Huangqingbo (Paul) Sun

M.S. Students

  • Jieyi Li
  • Ju-Chun Huang

Staff

  • Ted Zhang

Alumni

Post-doctoral Research Associates

  • Jose Lugo-Martinez (2017-2021)
    • Assistant Professor, University of Puerto Rico, Rio Pedras, 2021-2022
    • Assistant Professor, Computational Biology Department, Carnegie Mellon University, 2022-
  • Maja Temerinac-Ott (University of Freiburg) (2013-2016)
    • Postdoctoral Fellow, University of Strasbourg, 2016-
  • Taraz Buck (2013)
  • Seung-Il Huh (2013)
    • Google Laboratories, Pittsburgh, 2014-
  • Baek-Hwan Cho (2009-2012; supported by Korea Research Foundation)
    • Assistant Professor, Samsung Medical Center, Seoul, 2017-
    • Research Staff, Samsung Advanced Institute of Technology, 2012-2016
  • Arvind Rao (Lane Fellow, 2008-2011)
  • Russell Wilson
  • Peter Kulakosky

Graduate Students

  • Aparna Kumar, Ph.D., Computational Biology (2021)
    • Data Scientist, Dow Jones, 2015-
  • Xiongtao Ruan, Ph.D., Computational Biology (2019)
    • Postdoctoral Fellow, University of California, Berkeley, 2019-
  • Sun Uk Kim, M.S., Biomedical Engineering (2018)
    • Software Engineer, LINE Plus Corp
  • Jingyi Wang, M.S., Biomedical Engineering (2017)
    • Data Scientist, KPMG Lighthouse
  • Timothy Majarian, M.S., Computational Biology (2017)
    • Computational Associate, Broad Institute of MIT and Harvard
  • Gregory R. Johnson, Ph.D., Computational Biology (2016)
    • Scientist/Machine Learning Specialist, Allen Institute for Cell Science, 2016-
  • Devin Sullivan, Ph.D., Computational Biology (2015)
    • Postdoctoral Fellow, Science for Life Labs, KTH Royal Institute of Technology, Stockholm, Sweden, 2015-
  • Taraz Buck, Ph.D., Computational Biology (2013)
  • Armaghan Naik, Ph.D., Computational Biology (2013)
  • Joshua D. Kangas, Ph.D., Computational Biology (2013)
    • Assistant Teaching Professor, Computational Biology Department, Carnegie Mellon University, 2018-
    • Chief Executive Officer, Quantitative Medicine, LLC, 2017-
    • Cofounder and Chief Science Officer, Quantitative Medicine, LLC, 2012-2017
  • Jieyue Li, Ph.D., Biomedical Enginnering (2012)
    • Machine Learning Expert, ZestFinance, Los Angeles, CA
  • Aabid Shariff, Ph.D., Computational Biology (2012) (Jointly advised with Gustavo Rohde)
  • Luis Pedro Coelho, Ph.D., Computational Biology (2011)
  • Tao Peng, Ph.D., Biomedical Engineering (2011)
    • Software Engineer, Bing Indexing and Knowledge team, Microsoft, Bellevue, Washington, 2011-
  • Tien-ho (Henry) Lin, Ph.D., Language Technologies (2011) (Jointly advised with Ziv Bar-Joseph)
    • Postdoctoral Fellow, eScience group, Microsoft Research, Los Angeles, California, 2011-
  • Justin Newberg, Ph.D., Biomedical Engineering (2009)
  • Ivan Cao-Berg, M.S., Computational Biology (2009)
  • Elvira (Garcia Osuna) Osuna Highley, Ph.D., Biomedical Engineering (2007)
  • Shann-Ching Chen, Ph.D., Biomedical Engineering (2007)
    • Senior Oncology Bioinformatician, Natera, 2016-
    • Scientific Program Director, University of California, San Francisco, 2015-2016
    • Bioinformatics Staff Scientist, Life Technologies, Inc., 2013-2015
    • Bioinformatics Associate Research Scientist, St. Jude Children's Research Hospital, 2009-2013
    • Postdoctoral Fellow, Gaudenz Danuser group, Scripps Research Institute, 2007-2009
  • Ting Zhao, Ph.D., Biomedical Engineering (2007)
    • Senior Software Engineer, Howard Hughes Medical Institute, 2012-
    • Assistant Professor, Qiushi Academy for Advanced Studies, Zhejiang University, 2010-2012
    • Postdoctoral Fellow, Eugene W. Myers group, Janelia Farm Research Campus, Howard Hughes Medical Institute, 2007-2010
  • Yanhua Hu, Ph.D., Biological Sciences (2007)
    • Senior Research Investigator, Bristol-Myers Squibb, 2016-
    • Research Investigator, Bristol-Myers Squibb, 2007-2016
  • Juchang Hua, Ph.D., Biological Sciences (2007), M.S. Computational and Statistical Learning (2006)
    • Vice President, Morgan Stanley, 2013-
    • Associate then Vice President, Goldman Sachs Group, Inc., 2007-2013
  • Amol Shanbhag, M.S., Biomedical Engineering (2006)
  • Xiang Chen, Ph.D., Biological Sciences (2005), M.S. Computational and Statistical Learning (2005)
  • Kai Huang, Ph.D., Biological Sciences (2004), M.S. Computational and Statistical Learning (2003)
    • Associate, Fixed Income and Derivatives Department, Credit Suisse First Boston, New York
  • Meel Velliste, Ph.D., Biomedical Engineering (2002)
    • Vice President of Engineering, Fivetran, 2012-
    • Research Assistant Professor, University of Pittsburgh, 2006-2012
    • Postdoctoral fellow, Schwartz lab, Department of Neurobiology, University of Pittsburgh, 2002-2006
  • Edward J.S. Roques, M.S., Computational Biology (2001)
  • E. John Meharra, Ph.D., Biological Sciences (2001, posthumous)
  • Michael V. Boland, Ph.D., Biomedical Engineering (1999)
  • Sheree Rybak, Ph.D., Biological Sciences (1997)
  • Sandra Brockman, Ph.D., Biological Sciences (1994)
    • Associate, Proskauer Rose LLP, Boston, MA, 2005-
    • Associate, Hamilton, Brook, Smith & Reynolds, P.C., Boston, MA, 2003-2005
    • Technical Specialist, Hamilton, Brook, Smith & Reynolds, P.C., Boston, MA, 1996-2003
    • Postdoctoral Fellow, Harvey Lodish, Whitehead Institute, MIT
  • David Sipe, Ph.D., Biological Sciences (1990)
    • Researcher, Minden lab, Carnegie Mellon University
    • Senior Scientist, Gull Labs, Inc., Salt Lake City, UT
  • Cynthia Corley (Cain) Mastick, Ph.D., Biological Sciences (1990)
    • Associate Professor, University of Nevada, Reno, 2008-
    • Assistant Professor, University of Nevada, Reno, 2003-2008
    • Postdoctoral Fellow, Alan Saltiel, Parke-Davis Pharmaceutical Research Division
    • Postdoctoral Fellow, Gus Lienhard, Dartmouth University
  • Mario Roederer, Ph.D., Biological Sciences (1988)
    • Director, Flow Cytometry Core Facility, Vaccine Reserch Center, NIAID, NIH, 2000-
    • Postdoctoral Fellow, then Senior Postdoctoral Fellow, then Research Associate, Herzenberg Laboratory, Stanford University School of Medicine, Palo Alto, CA, 1988-2000

Visiting Graduate Students

Undergraduate Students

2016
  • Minnah Ahn
  • Rachel Kositsky
2015
  • Aparna Alavilli
  • Tiffany Phan
  • Meiqi Wang
2014
  • Rebecca Elyanow
  • Steven Zhang
2013
  • Charlotte Darby
  • Xuexia Jiang
  • Ling-Yi Kung
  • John Sexton
  • Patrick Im
2009
  • Brian Granger
2007
  • Alex Hu
  • Kyle Chang
2006
  • Eva Goellner
  • Andy Hsieh
2004
  • Esther Kieserman
2003
  • Batul Merchant
  • Richard Wang
2002
2001
  • James Gajnak
1999
1998
1997
1996
  • Jennifer Schwartz
  • Sarah Broadley
1995
  • Jennifer Wightman
1994
  • Mirella Bucci, Ph.D.
    • Associate Editor, Nature, 2002-
    • Postdoctoral fellow, 1999-2002, Kopito lab, Stanford Univ
    • Ph.D., Biology, 1999, Wente lab, Washington Univ
1993
1987
  • Robert Bowser, Ph.D.
    • Associate Professor, Department of Pathology, University of Pittsburgh
    • Post Doc, Albert Einstein College of Medicine
    • Ph.D., Section of Cell Biology, Yale University
  • Robert Mays, Ph.D.
  • Kevin Ryan
1986
SURP Students
  • Evan Cesanek (2012)
  • Orhan Ayasli (2005)
  • Eva Goellner (2005)
  • Andy Hsieh (2005)
  • Alexander Hu (2005)
  • John Sheridan (2005)
  • Ajay Surie (2004)
  • Julianna Conde-Adorno (2003)
  • Stalia Soto (2002)
  • Gregory Porreca (2001)
  • Adrienne Wells (2000)
  • Carlos De-Juan Ruffin (1999)
  • Bill Dirks (1997, 1998)
  • Mia Markey (1996)
  • Heather O'Hagan (1996)
  • Jennifer Slack (1994)
SUREBET Students
  • Aimee Sanchez, University of the Virgin Islands (2007)
  • Ivan Cao Berg, Universidad Metropolitana (2005)
  • Jesus Carmona, Universidad Metroplitana (2005)
  • Lori Dansie, California State University San Bernadino (2005)
  • Verleen McSween, University of the Virgin Islands (2005)
  • Amber Reed, University of California Irvine (2005)
  • Stalia Soto, Universidad Metropolitana (2005)
  • Julianna Conde-Adorno, Universidad Metropolitana (2004)
  • Alexander David, University of the Virgin Islands (2004)
  • Danielle Izaak, University of the Virgin Islands (2004)
  • Yenixsa Rivera-Sierra, Universidad Metropolitana (2004)

Technicians and Staff

  • Jennifer Bakal
  • Heather Bourdeau
  • Clark Brown
  • Mathew Joffe
  • Amy Kennedy
  • Greg LaRocca
  • Julie Scott
  • Saboor Sheikh
  • Suzanne Spilsbury




Last Updated: 01 Feb 2023




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