[an error occurred while processing this directive]

Murphy Lab

 Cytometry Development Workshop

 Flow Cytometry


 Carnegie Mellon University
 Computational Biology Department
 Center for Bioimage Informatics
 Biological Sciences Department
 Biomedical Engineering Department
 Machine Learning Department

[an error occurred while processing this directive]


 Lab FAQ
 Lab Research Topics


Web Pages
 Web Page Template
 Visitation Statistics
 Important Links

Software and Documentation
 Matlab Docs
 Khoros Docs
 TN-Image Docs
 Michael Boland's thesis

Murphy Lab - Software - Bioinformatics 2007 Yeast

The data and software used for the following paper can be downloaded below:

S.-C. Chen, T. Zhao, G. J. Gordon, and R. F. Murphy (2007). Automated Image Analysis of Protein Localization in Budding Yeast. Bioinformatics 23:i66-i71.

The Matlab code can be downloaded as a 4.5 MB zip file here. It contains a README file containing instructions for downloading the primary data from http://yeastgfp.ucsf.edu (including a Perl script that will do the download) and for running the analyses.

The intermediate results files that are generated by the code and then used to generate the figures can be downloaded here as a 136 MB zip file. To use it, unzip it under the directory containing the Matlab code and primary data. The figures can then be generated using the makedata8.m script.

System requirements

The scripts were written for Matlab on Linux, version 7.0 or above. The statistics toolbox and image processing toolbox for Matlab are also required.

Tools created by others that are included in the code distribution for convenience

Last Updated: 28 Mar 2008

Copyright © 1996-2019 by the Murphy Lab, Computational Biology Department at Carnegie Mellon University