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Carnegie Mellon University
Center for Bioimage Informatics
Biological Sciences Department
Biomedical Engineering Department
Machine Learning Department
MBIC

Murphy Lab - Software - Bioinformatics 2001

Archives of all Software

`boland_murphy_bioinfo_2001.tgz`
`boland_murphy_bioinfo_2001.zip`

Matlab Scripts for Image Processing

`mb_hela_v01.m`
`mb_imgcommonpixel.m`
`mb_imgbgsub.m`
`mb_cropthresh.m`
`mb_imgscale.m`
`mb_imgshift.m`
`mb_nihscale.m`
`mb_nihthreshold.m`

Matlab Scripts for Feature Calculation

`mb_imgconvhull.m`
`mb_imgfeatures.m`
`mb_hullfeatures.m`
`mb_zernike.m`
`mb_Vnl.m`
`mb_imgedgefeatures.m`
`mb_imgmoments.m`
`mb_imgcentmoments.m`
`mb_factorial.m`

C++ code for Zernike Feature Calculation

Note that this code is used in conjunction with the mb_zernike.m file.

mb_Znl.cpp

C code for Haralick Feature Calculation

`mb_texture.c`
`cvip_pgmtexture.c`
`CVIPdef.h` `CVIPtexture.h` `CVIPtyp.h` `ppbm.h` `ppbmplus.h` `ppgm.h`

Matlab scripts for Neural Network Training/Testing

Note that these scripts depend on the Netlab package.

mb_mlptrainstoptest.m

mb_mlptrainstoptestsets.m

mb_mlpsets.m

mb_mlptraintest.m

mb_mlptrain.m

mb_featurenorm.m

mb_mlpfinalreport.m

mb_mlpthreshtest.m

mb_mlpconfmatall.m

mb_mlpclasssummary.m

mb_latextable.m

mb_misclassnamesprint.m

mb_misclassnames.m

mb_mlpthresh.m

mb_mlpconfmat.m

Last Updated: 01 Dec 2004

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